Webb4 apr. 2024 · simplifyEnrichment: Simplify functional enrichment results simplifyGO: Simplify Gene Ontology (GO) enrichment results simplifyGOFromMultipleLists: Perform simplifyGO analysis with multiple lists of GO IDs subset_enrichResult: Subset method of the enrichResult class term_similarity: Similarity between terms based on the overlap of … WebbsimplifyEnrichment_manuscript. Scripts for the analysis in simplifyEnrichment manuscript: collect_sim_mat.R: It performes gene set enrichment analysis on EBI Expression Atlas …

simplifyEnrichment，一个对GO富集结果进行聚类和可视化的工具_ …

WebbCircular layout is an efficient way for the visualization of huge amounts of information. Here this package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of the package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily … WebbsimplifyEnrichment starts with the GO similarity matrix. Users can use their own similarity matrices or use the GO_similarity() function to calculate the semantic similarity matrix. … how many people does a 2 ft sub feed

simplifyEnrichment: an R/Bioconductor package for Clustering and

Webb6 feb. 2024 · Computes proximity between rows or columns of large matrices efficiently in C++. Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries. Among several built-in similarity/distance measures, computation of correlation, cosine similarity and Euclidean distance is particularly fast. WebbProvides support for rendering of formatted text using 'grid' graphics. Text can be formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be rendered both with and without word wrap. WebbThis is basically a wrapper function that it first runs cluster_terms to cluster GO terms and then runs ht_clusters to visualize the clustering. The arguments in simplifyGO passed to … how many people does a 20 pound turkey feed